The adoption of ethical, culturally attuned research frameworks in epigenetics to support Māori health advancement is promoted in an analysis of the Multi-Ethnic New Zealand Study of Acute Coronary Syndromes. The analysis followed Te Tiriti o Waitangi principles and used kaupapa Māori methodologies, emphasising equity, social accountability, and indigenous data sovereignty. As an exemplar, the analysis identified the potential of DNA methylation markers, such as cg05575921 in AHRR for smoking exposure assessment, as well as the risks, including genetic confounding, population-specific variation, and the potential for individual and transgenerational stigma. Multi-ethnic validation of DNA methylation markers is needed to prevent exacerbation of health inequities, the authors stated.